Three years ago I used this script provided (Revisions · Script based on code from the DepMap portal code to compute the top N pearson correlations and write to a CSV file · GitHub) to calculate co-dependencies for every gene. This was for CERES data. It was very useful for drawing some interaction networks in Cytoscape.
I just used it again for the latest CHRONOS data and the results were nothing like what is up on the website. I used the CRISPRGeneEffect file.
I was wondering if I did something wrong, or this script is outdated for CHRONOS data?
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