in studies generating new gene models like this one Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer | Genome Biology | Full Text (biomedcentral.com)
We may need non-coding variants to analyze neoantigens. I am wondering is it possible to provide the vcf file or some more variants, which will be very helpful for researchers. Otherwise we need to run the variant call locally, which can be much more challenging.
The files can be gzipped which will greatly reduce the file sizes and save the bandwidth.
Thank you！
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