Hi DepMap team,
I am looking at features like Aneuploidy, WGD etc in the OmicsSignatures.csv files - between 24Q2 and 24Q4 version. There are some cell lines that show discordant values and some that were available before but are now missing?
What could be the reason for this discordance? More prominent for Aneuploidy and Ploidy features.
Below I am pasting the output of WGD concordance. See that there were 42 cell lines that had WGD status but are now missing? In this case can we impute them from 24Q2 information - or is that now considered incorrect?
24Q4
24Q2 0 1 <NA>
0 470 4 5
1 4 977 37
<NA> 71 81 284
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