I am using “DepMap Public 22Q2 Primary Files”. I have a list of a few hundred genes. For each gene I want to determine whether it has a copy number deletion or not. Also, for each gene I want to determine whether it has a copy number amplification or not.
Could you please advise how to get this information?
I was looking at CCLE_gene_cn.csv. But this seems to contain floating point values, I do not understand how to interpret those how they relate to copy number deletions/amplifications. Also not sure if this is even the right file to look at.
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