Hi folks!
I am trying to explore the correlation among a protein-coding gene, a LncRNA, and a microRNA among lung cancer cell lines. CCLE2019 datasets seem to suit my needs. But I got a little uncertain which dataset I should use.
I saw RNAseq_genes_rpkm and RNAseq_genes_tpm for regular RNAseq.
I also saw miRNA_MIMAT and miRNA_20181103.gct.
May I ask if the MIMAT and 20181103.gct are interchangable dataset with same normalization method? Is it rpkm or tpm annotated?
Thanks,
Shang
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