Multiple SMILES in secondary-screen-dose-response-curve-parameters.csv
Hello, I hope this message finds you well. I am currently working with the dataset in the file secondary-screen-dose-response-curve-parameters.csv and noticed that the “smiles” column contains...
View ArticleAvailability of of RNA-seq bigwig files
Hello, I am looking for RNA-seq genome-wide coverage data in bigwig format (instead of table with expression per gene). Is this level of data available? Or a level of data that could be converted to...
View ArticleNormalization -TMM
Hi I want to understand that if I have to do TMM normalization rather than using TPM as TPM is not considered a very good parameter to compare across different samples. Which file with Raw reads would...
View ArticleNegative goodness of fit
Dear DepMap team, Why some r2 values in the Prism secondary-screen-dose-response-curve-parameters.csv file are negative? Isn’t r2 bounded between 0 and 1? Thanks 1 post - 1 participant Read full topic
View ArticleNon-breaking space in Model.csv current version (2024Q4)
Hi - Minor but I hit a potential problem using the current (2024Q4) version of Model.csv. For the entry for model ID ACH-000938, for the field ModelSubtypeFeatures, it contains “DUX4” and then some...
View ArticleClik here to view.
error in custom analysis
I’m trying to compare the CRISPR dependencies of one cell line vs two other cell lines. It returns an unexpected error. 2 posts - 2 participants Read full topic
View Article